Release Notes

Version 0.4.2 (2019-12-26)

  • Fixed bugs related to HMM training failures

  • Added domaincaller and visualize modules

Version 0.4.1 (2019-05-03)

  • Improved command-line options

Version 0.4.0 (2018-11-24)

  • Migrated to Python 3 (will not support Python 2 anymore)

  • Cool support

  • Added two handy scripts tad-plot and output-DI

  • Changed to pomegranate for HMM learning

Version 0.3.1-r1 (2017-8-18)

  • Fixed a bug in the definition of conserved TADs

Version 0.3.1 (2017-7-19)

  • Improved the performance of HiTAD by modifying the objective function used in the TAD and sub-TAD detection procedure.

  • Streamlined the log and the code documentation.

  • Added a new method named convertMatrix to tadlib.calfea.analyze.Core.

  • Migrated the documentation site from PyPI to Github

Version 0.3.0-dev2 (2017-5-28)

  • Removed the --cache option from hitad command-line tool.

Version 0.3.0-dev1 (2017-5-2)

  • Added the HiTAD module for hierarchical TAD detecting

Version 0.2.5-r2 (2016-4-14)

  • TADLib will not support python2.6 anymore

Version 0.2.5-r1 (2015-11-10)

  • Only check for update when you are online

Version 0.2.5 (2015-11-7)

  • Added snippets for automatic update checking

  • Added a log handler for the import case

Version 0.2.4 (2015-4-14)

  • Changed the significant interaction selection algorithm

  • Removed the TAD identification module based on the controversial constrained hierarchical clustering algorithm

Version 0.1.0 (2014-11-25)

  • The first release containing the Aggregration Preference(AP) calculation module and an optional TAD identification module