Release Notes¶
Version 0.4.2 (2019-12-26)¶
Fixed bugs related to HMM training failures
Added domaincaller and visualize modules
Version 0.4.1 (2019-05-03)¶
Improved command-line options
Version 0.4.0 (2018-11-24)¶
Migrated to Python 3 (will not support Python 2 anymore)
Cool support
Added two handy scripts tad-plot and output-DI
Changed to pomegranate for HMM learning
Version 0.3.1-r1 (2017-8-18)¶
Fixed a bug in the definition of conserved TADs
Version 0.3.1 (2017-7-19)¶
Improved the performance of HiTAD by modifying the objective function used in the TAD and sub-TAD detection procedure.
Streamlined the log and the code documentation.
Added a new method named convertMatrix to tadlib.calfea.analyze.Core.
Migrated the documentation site from PyPI to Github
Version 0.3.0-dev2 (2017-5-28)¶
Removed the
--cache
option from hitad command-line tool.
Version 0.3.0-dev1 (2017-5-2)¶
Added the HiTAD module for hierarchical TAD detecting
Version 0.2.5-r2 (2016-4-14)¶
TADLib will not support python2.6 anymore
Version 0.2.5-r1 (2015-11-10)¶
Only check for update when you are online
Version 0.2.5 (2015-11-7)¶
Added snippets for automatic update checking
Added a log handler for the import case
Version 0.2.4 (2015-4-14)¶
Changed the significant interaction selection algorithm
Removed the TAD identification module based on the controversial constrained hierarchical clustering algorithm
Version 0.1.0 (2014-11-25)¶
The first release containing the Aggregration Preference(AP) calculation module and an optional TAD identification module