Release Notes
=============
Version 0.4.2 (2019-12-26)
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- Fixed bugs related to HMM training failures
- Added *domaincaller* and *visualize* modules

Version 0.4.1 (2019-05-03)
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- Improved command-line options

Version 0.4.0 (2018-11-24)
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- Migrated to Python 3 (will not support Python 2 anymore)
- *Cool* support
- Added two handy scripts *tad-plot* and *output-DI*
- Changed to *pomegranate* for HMM learning

Version 0.3.1-r1 (2017-8-18)
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- Fixed a bug in the definition of conserved TADs

Version 0.3.1 (2017-7-19)
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- Improved the performance of HiTAD by modifying the objective function
  used in the TAD and sub-TAD detection procedure.
- Streamlined the log and the code documentation.
- Added a new method named *convertMatrix* to *tadlib.calfea.analyze.Core*.
- Migrated the documentation site from PyPI to Github

Version 0.3.0-dev2 (2017-5-28)
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- Removed the ``--cache`` option from *hitad* command-line tool.

Version 0.3.0-dev1 (2017-5-2)
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- Added the HiTAD module for hierarchical TAD detecting

Version 0.2.5-r2 (2016-4-14)
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- TADLib will not support python2.6 anymore

Version 0.2.5-r1 (2015-11-10)
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- Only check for update when you are online

Version 0.2.5 (2015-11-7)
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- Added snippets for automatic update checking
- Added a log handler for the import case

Version 0.2.4 (2015-4-14)
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- Changed the significant interaction selection algorithm
- Removed the TAD identification module based on the controversial constrained
  hierarchical clustering algorithm

Version 0.1.0 (2014-11-25)
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- The first release containing the Aggregration Preference(AP) calculation module
  and an optional TAD identification module