Hierarchical TAD Identification
===============================
.. autoclass:: tadlib.hitad.chromLev.Chrom
   :members:

.. autoclass:: tadlib.hitad.chromLev.MultiReps
   :members:

.. autoclass:: tadlib.hitad.genomeLev.Genome
   :members:

Domain Loading and Aligning
===========================
.. autoclass:: tadlib.hitad.aligner.DomainAligner
   :members:

.. autoclass:: tadlib.hitad.aligner.BoundAligner
   :members:

.. autoclass:: tadlib.hitad.aligner.DomainSet
   :members:

.. autoclass:: tadlib.hitad.aligner.BoundSet
   :members:

.. autoclass:: tadlib.hitad.aligner.SingleDomain
   :members:

.. autoclass:: tadlib.hitad.aligner.SingleBound
   :members:

.. autoclass:: tadlib.hitad.aligner.Container

.. autoclass:: tadlib.hitad.aligner.Node

.. autofunction:: tadlib.hitad.aligner.readHierDomain

.. autofunction:: tadlib.hitad.aligner.readPlainDomain

.. autofunction:: tadlib.hitad.aligner.hierFormat